*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Avalon x Cadenza
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat, Avalon x Cadenza 4A1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Avalon x Cadenza [ View Map Set Info ]
Map Name: Wheat, Avalon x Cadenza 4A1
Map Start: 0
Map Stop: 110.5
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 4A1
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
wPt-9901 locus 110.5 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 4A wPt-9901 locus 79.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7A wPt-9901 locus 4.5 () Automated name-based View Maps
BS00010582 locus 59.9 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00010582 locus 64.8 () Automated name-based View Maps
cos5V1 locus 56.1 No other positions
Xwmc161 locus 56.1 Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-4A Xwmc161 locus 47.2 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-4A Xwmc161 locus 108.5 () Automated name-based View Maps
Xwmc258 locus 51.2 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xwmc258 locus 106 () Automated name-based View Maps
BS00010504 locus 45 No other positions
BS00003674 locus 43.9 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00003674 locus 51.4 () Automated name-based View Maps
Xbarc170 locus 38.4 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-4A Xbarc170 locus 82 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xbarc170 locus 79 () Automated name-based View Maps
PHSZXQ118 locus 38.4 No other positions
BS00003623 locus 36.1 No other positions
Xdupw4 locus 36.1 No other positions
BS00010455 locus 33.4 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00010455 locus 37.1 () Automated name-based View Maps
Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4B BS00010455 locus 3.7 () Automated name-based View Maps
BS00001241 locus 27.9 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00001241 locus 27.7 () Automated name-based View Maps
BS00009974 locus 27.9 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00009974 locus 27.7 () Automated name-based View Maps
BS00010339 locus 26.3 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00010339 locus 32.6 () Automated name-based View Maps
cos4G locus 26.3 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 3B cos4G locus 223.4 () Automated name-based View Maps
BS00001207 locus 14.3 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00001207 locus 10.8 () Automated name-based View Maps
BS00003776 locus 13.2 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00003776 locus 7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BS00003776_51 locus 31.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BS00003776_51 locus 31.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 BS00003776_51 locus 31.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_4A BS00003776_51 locus 19.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_4A BS00003776_51 locus 26.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_4A BS00003776_51 locus 21.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_4A BS00003776_51 locus 22.6 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_32 BS00003776_51 locus 11.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_4A BS00003776_51 locus 22 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 BS00003776_51 locus 31.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_6 BS00003776_51 locus 41.11 (cM) Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_4A BS00003776_51 locus 23 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 BS00003776_51 locus 31.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_4A BS00003776_51 locus 53.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BS00003776_51 locus 31.7 () Automated name-based View Maps
Xcfd2 locus 1.2 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 1B Xcfd2 locus 86.5 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-4A Xcfd2 locus 15.3 () Automated name-based View Maps
BS00003914 locus 0 Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-4A BS00003914 locus 0 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.